@extends("base.html") @require(htmlbase, view, pluginbase) @def content():

PRIDE data Import

Import data from the PRIDE PRoteomics IDEntifications (PRIDE) database
Martin A. Fitzpatrick

Introduction

The PRIDE PRoteomics IDEntifications (PRIDE) database is a centralized, standards compliant, public data repository for proteomics data, including protein and peptide identifications, post-translational modifications and supporting spectral evidence.

Quick start

This plugin supports the import of quantified protein data only. To import the data simply load the downloaded file. Known proteins will be mapped to internal MetaCyc database.

References

  1. Kenneth Haug, Reza M. Salek, Pablo Conesa, Janna Hastings, Paula de Matos, Mark Rijnbeek, Tejasvi Mahendrakar, Mark Williams, Steffen Neumann, Philippe Rocca-Serra, Eamonn Maguire, Alejandra González-Beltrán, Susanna-Assunta Sansone, Julian L. Griffin and Christoph Steinbeck. MetaboLights-- an open-access general-purpose repository for metabolomics studies and associated meta-data. Nucl. Acids Res. (2013) doi: 10.1093/nar/gks1004
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